From Wednesday, arrivals from China will have to show proof of vaccination or a negative result obtained before departure -- "just the same as all the other travellers and returnees", a government statement said.
The decision brings to an end a spat over Covid border measures which began in January.
Then, more than a dozen countries imposed new travel rules as infections surged in China, which had just relaxed its strict zero-Covid policies.
In a tit-for-tat move, China suspended issuing short-term visas to Japanese citizens, with the Chinese foreign ministry hitting out against "discriminatory practices".
It resumed issuing visas to Japanese citizens in late January, but Japan kept its testing-on-arrival requirement for China.
Chinese tourists made up around a third of all visitors to Japan before the pandemic.
Last week, Britain also said travellers flying in from China would no longer need proof of a negative test from April 5.
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